rs31859545 SNP Detail

Summary

• ID
  rs31859545
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45025534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTACAGC AAGATGCTCT
  TAGTAAAACC ATAAGCCTAC CTGCAAATGT GGCAAACACA GGAATGAGTG AAGTTCCCTT
  TCAGGACCAG CTATCTGTGC TCTCATGATG TAGATGCTTC TCAGCTCTCT GGTGGTATCT
  GTCCTTGGTT ATATGTAAAG ACTTATAAGC CTTAAGCAGC AGATTGGAGT ACTATCATTC
  W
  GCCCTCAATG GGACTACCTT CAGCCTTTCT TCAGGACTGT GCCAGGCTGG CCCCAGCTTC
  CTCAGGGCCC ACCATACTCA AAGCTCTCCC AGCTGCCTTC CATCCAGAAA TGTGTGGGTA
  CCAACTGCTG ATGGCTGGCA TCCTGCCTCT TTGCCTGCTG TTCTCTCACT TAAAGATGCA
  GCCTGTTATG AGAGCCAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46076418	mCV22694942	ABI	CRAMUS_MOUSE	f	SNP	A	T	A				A		A
ss61003647	NES16116941	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		T	A	A	A	T	A	T	T	T
ss149134176	ENSMUSSNP5808976	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31859545					SNP	A	T	A	A	A	A	A	T	A	A	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003647	NES16116941	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45025534 () rs orientation: forward

Symbol	Name	Function Class
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	343 bp downstream
Tssr66520	transcription start site region 66520	1060 bp upstream