rs31859679 SNP Detail

Summary

• ID
  rs31859679
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22181189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGATACACCC AGTTCATAGG ATCTCAAACC TCCTGACAAT
  GATAAAAATC CACAGCAGAA TTGTGAGCGC GGCGTCCTTA AGAGCAACTG CAGAAAACAA
  S
  CCCCTGCTCC GCTCCAGCCC ATTTCCCAGC CCCGCAGCTC CTCTGACCTG CAAGGTTCCA
  GGGCCGCCGG GCTGCGGTGC CCGCGGCTGC GCGGCTGAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46076521	mCV23290471	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss145294139	ENSMUSSNP4745831	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss325322944	CHEV_17_22099175	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31859679					SNP	C	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22181189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8665	CpG island 8665	507 bp proximal
Gm7805	predicted gene 7805	1928 bp downstream
Rr405064	regulatory region 405064	195 bp upstream
Rr523003	regulatory region 523003	within coordinates
Rr523004	regulatory region 523004	233 bp proximal
Rr523005	regulatory region 523005	362 bp proximal
Tssr142901	transcription start site region 142901	522 bp upstream
Tssr142902	transcription start site region 142902	1381 bp upstream
Zfp942	zinc finger protein 942	within coordinates
Zfp943	zinc finger prtoein 943	351 bp upstream