rs31860008 SNP Detail

Summary

• ID
  rs31860008
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:83920281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGATCCTT ATCTGGATCT TGGTATGGAG ATCTTGAGCC
  ATAGTGGCTA TGGATTCCAG AAGATTGAAT CTCCGAGTTT AAGGAACACA CTTTTAATCT
  K
  GGCTACACCT TTCATCTGGG ATTAAAGGTG TGGTGGAACA CACCTTTAAT CTGAGCTACA
  CCTTCTGCTG GAGACAATAT AAGGACATTG GAAGAAGGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39333367	mCV25424140	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31860008					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:83920281 () rs orientation: forward

Symbol	Name	Function Class
Efcab6	EF-hand calcium binding domain 6	within coordinates
Rr308220	regulatory region 308220	919 bp proximal
Rr308221	regulatory region 308221	1319 bp proximal
Rr308222	regulatory region 308222	1720 bp proximal