rs31860154 SNP Detail

Summary

• ID
  rs31860154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48045841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCGCCGCCTC CCCTTTCAGG
  Y
  TTTCTCGCCC AGCTACCGGT GGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45578836	mCV24735988	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss146276405	ENSMUSSNP3534460	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss321109584	CHEV_4_48058713	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31860154					SNP	C	C	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48045841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14278	CpG island 14278	within coordinates
Cpgi14279	CpG island 14279	1446 bp proximal
Gm68858	predicted gene, 68858	1091 bp downstream
Gm69235	predicted gene, 69235	1613 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr376438	regulatory region 376438	624 bp downstream
Rr591927	regulatory region 591927	678 bp distal
Rr591928	regulatory region 591928	within coordinates
Rr591929	regulatory region 591929	295 bp distal
Rr591930	regulatory region 591930	1347 bp proximal
Tssr37185	transcription start site region 37185	1992 bp downstream
Tssr37186	transcription start site region 37186	1977 bp downstream
Tssr37187	transcription start site region 37187	717 bp downstream
Tssr37188	transcription start site region 37188	681 bp downstream
Tssr37189	transcription start site region 37189	651 bp downstream
Tssr37190	transcription start site region 37190	603 bp downstream
Tssr37191	transcription start site region 37191	534 bp downstream
Tssr37192	transcription start site region 37192	508 bp downstream
Tssr37193	transcription start site region 37193	452 bp downstream
Tssr37194	transcription start site region 37194	129 bp upstream
Tssr37195	transcription start site region 37195	1399 bp upstream
Tssr37196	transcription start site region 37196	1425 bp upstream
Tssr37197	transcription start site region 37197	1461 bp upstream
Tssr37198	transcription start site region 37198	1483 bp upstream
Tssr37199	transcription start site region 37199	1498 bp upstream
Tssr37200	transcription start site region 37200	1543 bp upstream
Tssr37201	transcription start site region 37201	1897 bp upstream
Tssr41631	transcription start site region 41631	937 bp upstream
Tssr41632	transcription start site region 41632	860 bp upstream
Tssr41633	transcription start site region 41633	1094 bp downstream
Tssr41634	transcription start site region 41634	1294 bp downstream