rs31860566 SNP Detail

Summary

• ID
  rs31860566
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13444485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA CCGGGCGGAA ACTTGCGTCC
  S
  GCGCCCCCGA GCGTGGGCCC GGGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45078060	mCV23396728	ABI	CRAMUS_MOUSE	f	SNP	G		G	C	C
ss148622285	ENSMUSSNP4407840	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		C
ss319643089	CHEV_1_13364342	CHEVERUD	SCREENING_POP	f	SNP						C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31860566					SNP	G	G	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13444485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi41	CpG island 41	within coordinates
Gm29570	predicted gene 29570	within coordinates
Gm51852	predicted gene, 51852	1941 bp downstream
Gm70663	predicted gene, 70663	within coordinates
Ncoa2	nuclear receptor coactivator 2	178 bp upstream
Rr395968	regulatory region 395968	1553 bp downstream
Rr407893	regulatory region 407893	1833 bp distal
Rr407894	regulatory region 407894	1752 bp distal
Rr407895	regulatory region 407895	189 bp distal
Rr407896	regulatory region 407896	568 bp distal
Rr407897	regulatory region 407897	within coordinates
Rr407898	regulatory region 407898	within coordinates
Rr407899	regulatory region 407899	446 bp proximal
Tssr5965	transcription start site region 5965	1343 bp downstream
Tssr10989	transcription start site region 10989	1804 bp upstream
Tssr10990	transcription start site region 10990	597 bp upstream
Tssr10991	transcription start site region 10991	370 bp upstream
Tssr10992	transcription start site region 10992	192 bp upstream
Tssr10993	transcription start site region 10993	186 bp upstream
Tssr10994	transcription start site region 10994	79 bp upstream
Tssr10995	transcription start site region 10995	within coordinates
Tssr10996	transcription start site region 10996	135 bp downstream
Tssr10997	transcription start site region 10997	171 bp downstream