rs31860603 SNP Detail

Summary

• ID
  rs31860603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73549994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTACTT CTGCTTTGAC
  TTCTCACCTG TGTTTTTATG GCATCTCTTT GTCCTTGCCG TTCCTTGGGG TCTCTTCCAC
  CATCTAGAGA TTTTTCTCAT CACTTGTGGT TTCTATTGCT TTCTGAACAA GAATATCCAA
  TGGCTTCTTG TTTTTTCTGT TTTATCTGGA AATTTTGTGA CTCTCTCCAT TGGTTATTAT
  Y
  CAGTCTAATG AACTTCAAGG AGGTAGAGTT CTTGCCTCTT AGATAGTCTT TGGTGCTGAT
  ATCTACACTC GGCAGAAAGA TGTCTCCAGG GTACAGAGAA TCATGTGGTA TTGATTAGAT
  TGTCCCTGAA TCTGCCAAGG ATTCATATAT ATCCATTCAG CATTCTATTA AATTAACCCA
  CCCTTACCTG GCTTGATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	FVB/NJ	KK/HlJ	NZW/LacJ
ss45077684	mCV23343942	ABI	CRAMUS_MOUSE	f	SNP	T	C				C
ss51279104	NES14522863	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T		C	C	C
ss144676742	ENSMUSSNP2789421	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	FVB/NJ	KK/HlJ	NZW/LacJ
rs31860603					SNP	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51279104	NES14522863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73549994 () rs orientation: forward

Symbol	Name	Function Class
Gm9553	predicted gene 9553	1211 bp upstream
Rr371511	regulatory region 371511	401 bp upstream