rs31860947 SNP Detail

Summary

• ID
  rs31860947
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85123070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCACCCAG TCCCATCCAC CCTTTGTCCC
  TATGTGGTGT TTGTATAACT TACTGCCTTT CCTTTCCTCA TTATATAAAA ATGTTAGAAC
  GAAAAAAAAA AAGAAAGAAA AAAATGTCCA TGATAATTGT GTGAATGCCA AGTTCGCATT
  M
  GTTTTTTTTT TCTTTTGAAA ATAGAAGATT AAATGTTATT ACTCATATCA ATATATGCTA
  TAGCTCATAT CAATTCCATT CCAGTATCCC AGTCAAACTG TAGGGACCTC TCTTCATCTT
  AAGTAGTTAA GTTGTACTAG AACAGGAAAA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45579115	mCV22286156	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss146897483	ENSMUSSNP1162636	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321193466	CHEV_4_84850737	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs31860947					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85123070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	247 bp proximal
Rr594659	regulatory region 594659	55 bp proximal
Rr594660	regulatory region 594660	713 bp proximal
Rr594661	regulatory region 594661	828 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	593 bp upstream
Tssr37705	transcription start site region 37705	287 bp upstream
Tssr37706	transcription start site region 37706	303 bp upstream
Tssr37707	transcription start site region 37707	318 bp upstream
Tssr37708	transcription start site region 37708	376 bp upstream
Tssr37709	transcription start site region 37709	584 bp upstream
Tssr37710	transcription start site region 37710	670 bp upstream
Tssr37711	transcription start site region 37711	685 bp upstream
Tssr37712	transcription start site region 37712	842 bp upstream