rs31861001 SNP Detail

Summary

• ID
  rs31861001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135873375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGCAGA GGCACACAAT
  CTCTTGAGTT TGAAACCTGG AACTCACTAT ATATATATTG CTATGTATAG TGAGTTCCAG
  GATGGTCAGC TACGCGGGAA GACCCTGTAT ATAGGAAAAC CAAACCCAGG GTCTTGCCTC
  AGGTCTGCAG CCACTTTTCA GGGTGTAGGC TTGCTGGGAA ACTCAAGTTC CCTTAATGTT
  Y
  GGTAAACTTT GACCTGGGGT TTGAGAATAA TGAGTATAGT ATTGCGGTTG GCAGGAAAGG
  GACCTTAGAC TGGCCATTTC TGGGGCAGGC CTGGGAGTTG GGTAAAAGGC AAGGTGGCAA
  CCCATGCCCC ATCTCTCCAC CCCAACATGG TTCCTCCCCA GGTGGGCTGC ATCAGGCCCC
  CATCGTCACA GGATTCCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45578568	mCV25111140	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss147559889	ENSMUSSNP1440323	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31861001					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135873375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15098	CpG island 15098	910 bp distal
Cpgi15099	CpG island 15099	1469 bp proximal
Gm57159	predicted gene, 57159	1021 bp upstream
Gm68296	predicted gene, 68296	1123 bp upstream
Id3	inhibitor of DNA binding 3	672 bp downstream
Rr377254	regulatory region 377254	115 bp upstream
Rr602286	regulatory region 602286	531 bp distal
Rr602287	regulatory region 602287	633 bp proximal
Rr602288	regulatory region 602288	1134 bp proximal
Tssr39668	transcription start site region 39668	1260 bp downstream
Tssr39669	transcription start site region 39669	1157 bp upstream