rs31861489 SNP Detail

Summary

• ID
  rs31861489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:95285374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATAAATT GAGATGGCTT
  GGCTCTTCTG GCAGCTGCCC TGGTAGCTAT GAGTTCAAAC ATCTTAATAC TTCCCTGCAA
  AATCCACTGC CTGTTTTGCT CTTTGTTGCT GTTGCTCTCC CTTTTGCAAG GGAATATAAA
  AAGCAGACAA GAAAAAGTGG TGGGGTGGAC AGCCAAGGGA CACAATGAGC TGATGGATGA
  Y
  ATAATTCCCA AACTGTAAAC AACTTGTTTT ATGACCTTTT GGAAGTCTTT CCCTAAACAT
  CAGACTTCAT TTTCTCATTT ATAATCTTGA ATGGGTAAAA CTAGATGACT TATAAGGGCA
  TTTTAATATC ATTAATTCTT TACTGCTTAT GAGAAAAGGC AACCAAGTTA GACAAAGCCG
  GCTAAGGCCA CAAGAAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49782676	NES12410509	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31861489					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49782676	NES12410509	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:95285374 () rs orientation: forward

Symbol	Name	Function Class
Mir223	microRNA 223	1049 bp upstream
Mir223hg	Mir223 host gene	within coordinates
Rr692554	regulatory region 692554	1835 bp distal
Tssr161561	transcription start site region 161561	1820 bp downstream
Tssr161562	transcription start site region 161562	1277 bp downstream
Tssr161563	transcription start site region 161563	1138 bp upstream