rs31861839 SNP Detail

Summary

• ID
  rs31861839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21483966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTTTTAT AATTTTAGTG TACTAGGAAA GATCGGGCAT
  TGTCATAGAA TGATACCCAT GATAAGGGCA TCAGAGCTCC TCTCTCTCCT TCCAATAGAG
  Y
  TGTAGTGAGG TGAGCTATGC TCTCAGAACA TGGTACTGAC CATTGCATAT CGAGAGAAAT
  GTTCTCAGTC ACTTGTCTCT TTCTTCAAAA ATATGTCTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47596710	NES10289699	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31861839					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47596710	NES10289699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21483966 () rs orientation: forward

Symbol	Name	Function Class
Gm43214	predicted gene 43214	302 bp downstream
Gsap	gamma-secretase activating protein	within coordinates
Rr607882	regulatory region 607882	1077 bp distal
Tssr45322	transcription start site region 45322	590 bp downstream
Tssr45323	transcription start site region 45323	655 bp upstream