rs31862515 SNP Detail

Summary

• ID
  rs31862515
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:21483638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGGGCA AAGAGATAGA
  ATGCTCCATC ATTTCTCTAA GTTTAAGTAA GATTGGTATG CAAATGAATC AGTATGTGAC
  TATATGTGTG TACTATGTAT GTGTGTTTGT GTGTGTACCT TTGCATGGTG TGTGTGTGGT
  TTGCAATGGC CTTTGGAAGA TTACATTTCT TAGCTAAGAG CAAGTGGATC TCTTCAATTA
  W
  TTTTAAAGTT CTACTTTTAC TCTAGTCATT AGTGACTGCT TTCATATTTG AAAATCTATC
  GAAAGGCTTG AATTTTGTAA TTGATTAATT AATTTTGCAT GCAGGTATTT TGTATGCATG
  TGTGCCTGGT GCCCACAGAG TCCAGAAGAG GGTGGCAGAC ACTGAACCAG GGTCCTCTGG
  AAGAGCAGTC AGTGCTCTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47596716	NES10289765	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31862515					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47596716	NES10289765	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21483638 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43214	predicted gene 43214			630 bp downstream
Gsap	gamma-secretase activating protein			Intron
				Noncoding-Transcript-Variant
Rr607882	regulatory region 607882			749 bp distal
Tssr45322	transcription start site region 45322			262 bp downstream
Tssr45323	transcription start site region 45323			983 bp upstream