rs31862518 SNP Detail

Summary

• ID
  rs31862518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21483626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATTCAG CTACAAAGGG
  CAAAGAGATA GAATGCTCCA TCATTTCTCT AAGTTTAAGT AAGATTGGTA TGCAAATGAA
  TCAGTATGTG ACTATATGTG TGTACTATGT ATGTGTGTTT GTGTGTGTAC CTTTGCATGG
  TGTGTGTGTG GTTTGCAATG GCCTTTGGAA GATTACATTT CTTAGCTAAG AGCAAGTGGA
  Y
  CTCTTCAATT AATTTTAAAG TTCTACTTTT ACTCTAGTCA TTAGTGACTG CTTTCATATT
  TGAAAATCTA TCGAAAGGCT TGAATTTTGT AATTGATTAA TTAATTTTGC ATGCAGGTAT
  TTTGTATGCA TGTGTGCCTG GTGCCCACAG AGTCCAGAAG AGGGTGGCAG ACACTGAACC
  AGGGTCCTCT GGAAGAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47596719	NES10289764	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31862518					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47596719	NES10289764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21483626 () rs orientation: forward

Symbol	Name	Function Class
Gm43214	predicted gene 43214	642 bp downstream
Gsap	gamma-secretase activating protein	within coordinates
Rr607882	regulatory region 607882	737 bp distal
Tssr45322	transcription start site region 45322	250 bp downstream
Tssr45323	transcription start site region 45323	995 bp upstream