rs31862521 SNP Detail

Summary

• ID
  rs31862521
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21483625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGATTCA GCTACAAAGG
  GCAAAGAGAT AGAATGCTCC ATCATTTCTC TAAGTTTAAG TAAGATTGGT ATGCAAATGA
  ATCAGTATGT GACTATATGT GTGTACTATG TATGTGTGTT TGTGTGTGTA CCTTTGCATG
  GTGTGTGTGT GGTTTGCAAT GGCCTTTGGA AGATTACATT TCTTAGCTAA GAGCAAGTGG
  M
  TCTCTTCAAT TAATTTTAAA GTTCTACTTT TACTCTAGTC ATTAGTGACT GCTTTCATAT
  TTGAAAATCT ATCGAAAGGC TTGAATTTTG TAATTGATTA ATTAATTTTG CATGCAGGTA
  TTTTGTATGC ATGTGTGCCT GGTGCCCACA GAGTCCAGAA GAGGGTGGCA GACACTGAAC
  CAGGGTCCTC TGGAAGAGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47596722	NES10289763	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31862521					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47596722	NES10289763	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21483625 () rs orientation: forward

Symbol	Name	Function Class
Gm43214	predicted gene 43214	643 bp downstream
Gsap	gamma-secretase activating protein	within coordinates
Rr607882	regulatory region 607882	736 bp distal
Tssr45322	transcription start site region 45322	249 bp downstream
Tssr45323	transcription start site region 45323	996 bp upstream