rs31864253 SNP Detail

Summary

• ID
  rs31864253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42792202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCATGAA AAGGGCTCCC
  ATCTAAAGTT CTTTTCCCCA GAACCATTTT AGATACTCAC TGAGAGTTTA TAAATTTTAG
  ATAGTGTTAT TATCATCTTT GATATAGTAT TTAAATTTAA GTGACTCTAA GGCATGCTTT
  TCTAAGTTAA AATAAAATGT GGCAGTCCAT TTGAATACAC GTACTGAGCC ACCTATTTCT
  Y
  AGCGTTCTGC ACATATGATC TCCAAGTCTG GCACCAGCCG AATGTGGCTT CAGAACCAGG
  ACCTGTGGTC TAAAACTAGA TTTGTTCTAA AAGCCTTTTC CCAAAATAAA AGTAATTGTG
  TTTGCCACCA AGTGTCCCTA ATCTTCTCTT TTCTAGGCGA GGCACTCTGG CAGCCTGCCT
  GCTGCAATAC CACCCACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49284199	NES12689995	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31864253					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49284199	NES12689995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42792202 () rs orientation: forward

Symbol	Name	Function Class
D18Mit23	DNA segment, Chr 18, Massachusetts Institute of Technology 23	992 bp distal
Ppp2r2b	protein phosphatase 2, regulatory subunit B, beta	within coordinates