rs31864333 SNP Detail

Summary

• ID
  rs31864333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126187155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGATGT TCACAGCAAC
  TGGAATGAGG TGAGGGCTTC AGCAGGGCCC CGAGAGGGAC AGGCAGAATC TGGAAGTCAG
  TTCTCCACAG TCCTCTATGT CCCTTATCCT GCAGGCCCTG CTCCCTGGGT CCCGCCTGGA
  TGTCTCTGTC CCTCGGAGTC GTGTGCTCCT CTCTCGAAGC TCCTCACGGC GGCGCTCGAG
  R
  CCCTCTTTCC ATCGAATCTC TGTTCCTGAG CCACAGTGTG ACCCTCCCAG CCCCCAACCC
  CAGGCGGAGC GGCCGGTCCC TGAGCAATCC TCTCTTCAGC TAGAGGAAAC TCCAGAGCTA
  AGTGCCACAA AGCCCGAGGG GACTCCAGTG CCAGCCAGAA GAAAAATGCT GGGGCGTGGG
  TAGGCACAGG GGCGCTATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46076479	mCV22750717	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss47255397	NES11556908	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31864333					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255397	NES11556908	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126187155 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	within coordinates
Il27	interleukin 27	1027 bp downstream
Tssr69040	transcription start site region 69040	1815 bp downstream
Tssr69041	transcription start site region 69041	1412 bp upstream
Tssr74769	transcription start site region 74769	446 bp upstream
Tssr74770	transcription start site region 74770	412 bp upstream
Tssr74771	transcription start site region 74771	1182 bp downstream
Tssr74772	transcription start site region 74772	1255 bp downstream
Tssr74773	transcription start site region 74773	1273 bp downstream
Tssr74774	transcription start site region 74774	1316 bp downstream
Tssr74775	transcription start site region 74775	1418 bp downstream
Tssr74776	transcription start site region 74776	1425 bp downstream
Tssr74777	transcription start site region 74777	1464 bp downstream
Tssr74778	transcription start site region 74778	1837 bp downstream