rs31864537 SNP Detail

Summary

• ID
  rs31864537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86234368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGCTTCT TGTCCTCACA GGGAAGCCCC CTTCCTGTGA
  AATGCCTCTG GCTCCCTGAG GGTCAAGCAG CCTTTGTGGG AGCTCAGGCC TGTGCAGGTC
  Y
  ACAGGTGTCC CCTGGCCCAC ATTGCTGGAC CTCCTAAGAT AGGAGCTCTC TCTCCATAGG
  CCCTCAGCAC AGCCCCAGGC TTGCCTGGAG TCAGCTGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45078788	mCV22889926	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss144875374	ENSMUSSNP836950	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31864537					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86234368 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	within coordinates
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	1373 bp proximal
Tssr7739	transcription start site region 7739	131 bp upstream
Tssr7740	transcription start site region 7740	1909 bp upstream
Tssr12766	transcription start site region 12766	1748 bp downstream