rs31865135 SNP Detail

Summary

• ID
  rs31865135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42792039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGGAAGT AGTAAATGAA
  AATATTTTAT GGTTGGGGTC ATCACAACAC GAGGAATGGT ATTAAAGGGT CACAGCATTA
  GGAAGGCTGA GGACCACTGC TCTAGGGGAT GCGGGGGATC TCTGCTTGTC CATGGGCCAA
  GGTTGGGTAG GTGGATACCT TGCTGCTCAT GAAAAGGGCT CCCATCTAAA GTTCTTTTCC
  Y
  CAGAACCATT TTAGATACTC ACTGAGAGTT TATAAATTTT AGATAGTGTT ATTATCATCT
  TTGATATAGT ATTTAAATTT AAGTGACTCT AAGGCATGCT TTTCTAAGTT AAAATAAAAT
  GTGGCAGTCC ATTTGAATAC ACGTACTGAG CCACCTATTT CTTAGCGTTC TGCACATATG
  ATCTCCAAGT CTGGCACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49284201	NES12689992	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31865135					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49284201	NES12689992	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42792039 () rs orientation: forward

Symbol	Name	Function Class
D18Mit23	DNA segment, Chr 18, Massachusetts Institute of Technology 23	829 bp distal
Ppp2r2b	protein phosphatase 2, regulatory subunit B, beta	within coordinates