rs31865676 SNP Detail

Summary

• ID
  rs31865676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19306288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATACTTC CTCCTGAGGC
  TGAATACCAA GGTAGAATTA TCACAGTATT GAAGTCCAGC AACCAAAAGC CCCCTTTGGC
  CCACCTAATT AACACACTTA TTTAAAATTA AACACCTCAC CCTAACACAG GGTTTCTCCT
  TGTGTCTTTA TAAATTGCCA TTTTTCTATG GGTCAAGTCT GTCTCCTCTT TATCCATTGG
  Y
  AGTCCTTTGT TCCTCTGGGA TACTCCTCCT CCTTCTCCCT TGTTCCCTTC CCCATCTCCC
  TCATTCTCTA TTTCCTGTCT TTGTCTCTAA TTCCCTGTTC TCTGTCCTTC TGGGGCAAAT
  GAATCTCCTT TGTGCTGAGC ACTTGTCCTG GAGGTTCTGG GCAGGTACTT TTCCTTTCAG
  TCTTAGCTAC AGAGAGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46077083	mCV25052816	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148479056	ENSMUSSNP6141452	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31865676					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19306288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	620 bp proximal
Gemin7	gem nuclear organelle associated protein 7	within coordinates
Rr380485	regulatory region 380485	within coordinates
Rr643192	regulatory region 643192	1295 bp distal
Rr643193	regulatory region 643193	173 bp proximal
Rr643194	regulatory region 643194	595 bp proximal
Rr643195	regulatory region 643195	1274 bp proximal
Tssr70933	transcription start site region 70933	994 bp downstream
Tssr70934	transcription start site region 70934	1009 bp downstream
Tssr70935	transcription start site region 70935	1016 bp downstream
Tssr70936	transcription start site region 70936	1430 bp downstream