rs31868216 SNP Detail

Summary

• ID
  rs31868216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36346086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCCCAGAG GGTCAAAGTC ATCAAATGCA
  GACTGTCCAT TTGTTCAGTG TGAAGGGGAA CACTAAAATG TTGGGGGCTA ACTATGAAGC
  CTTCCTCTGT GCCCCAATTC TCTAGCCCTA CCACCGACCA GTAATATGAG CTAATTAATC
  R
  CCCAGGCCTG TTTTGCTCTA TATAATGAAG ATAATGATGG TATGAAATGC ACCGAGCTGT
  ATGAGTATTA TAGTTAATCA ACAGAATTTG ATTCCGGGGA TACTAACTAC ATAATAGGAA
  CAGAGTTCGA GTTCAAGCTA ATAAGGCTTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45079690	mCV27594566	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss148924881	ENSMUSSNP5666998	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss319688331	CHEV_1_36363850	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31868216					SNP	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36346086 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	728 bp upstream
Cpgi139	CpG island 139	566 bp proximal
Gm70585	predicted gene, 70585	within coordinates
Rr366864	regulatory region 366864	905 bp upstream
Rr395991	regulatory region 395991	527 bp upstream
Rr409282	regulatory region 409282	1657 bp distal
Rr409283	regulatory region 409283	within coordinates
Rr409284	regulatory region 409284	609 bp proximal
Rr409285	regulatory region 409285	775 bp proximal
Tssr6253	transcription start site region 6253	722 bp upstream
Tssr6254	transcription start site region 6254	740 bp upstream
Tssr6255	transcription start site region 6255	769 bp upstream
Tssr6256	transcription start site region 6256	1054 bp upstream
Tssr6257	transcription start site region 6257	1132 bp upstream
Tssr6258	transcription start site region 6258	1262 bp upstream