rs31868780 SNP Detail

Summary

• ID
  rs31868780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172034028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGC ATGGACAGAG AAGGACCCCA
  Y
  GGAGCCTGAC ACCGTGGACC TGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45078750	mCV23614955	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss120007346	PARCsnp_1.17751	PARC_SEQ	INBRED	f	SNP			T	C
ss120010246	PARCsnp_1.07390	PARC_SEQ	INBRED	f	SNP			T	C
ss146183823	ENSMUSSNP3705228	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss320123199	CHEV_1_174136592	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31868780					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172034028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	within coordinates
Gm17224	predicted gene 17224	566 bp upstream
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr396578	regulatory region 396578	779 bp upstream
Rr423483	regulatory region 423483	1518 bp distal
Rr423484	regulatory region 423484	985 bp distal
Rr423485	regulatory region 423485	within coordinates
Rr423486	regulatory region 423486	333 bp proximal
Tssr294	transcription start site region 294	167 bp downstream
Tssr295	transcription start site region 295	219 bp downstream
Tssr296	transcription start site region 296	295 bp downstream
Tssr297	transcription start site region 297	326 bp downstream
Tssr15164	transcription start site region 15164	193 bp downstream
Tssr15165	transcription start site region 15165	223 bp downstream
Tssr15166	transcription start site region 15166	314 bp downstream
Tssr15167	transcription start site region 15167	1240 bp downstream