rs31870439 SNP Detail

Summary

• ID
  rs31870439
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAT GTCCAGCAGA CCTTCCGGAC
  D
  GAGATAAAAA TCTGAGGGTC TCTCC                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45579738	mCV22897369	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	G
ss147736144	ENSMUSSNP240175	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31870439					SNP	A	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	1793 bp proximal
Gm70191	predicted gene, 70191	303 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	Coding-Synonymous
Rr603759	regulatory region 603759	782 bp proximal
Rr603760	regulatory region 603760	1260 bp proximal
Tssr40062	transcription start site region 40062	1520 bp downstream
Tssr40063	transcription start site region 40063	34 bp downstream
Tssr40064	transcription start site region 40064	13 bp upstream
Tssr40065	transcription start site region 40065	28 bp upstream
Tssr40066	transcription start site region 40066	157 bp upstream
Tssr40067	transcription start site region 40067	205 bp upstream
Tssr40068	transcription start site region 40068	257 bp upstream
Tssr40069	transcription start site region 40069	389 bp upstream
Tssr40070	transcription start site region 40070	474 bp upstream
Tssr40071	transcription start site region 40071	498 bp upstream
Tssr40072	transcription start site region 40072	543 bp upstream
Tssr40073	transcription start site region 40073	566 bp upstream
Tssr40074	transcription start site region 40074	591 bp upstream
Tssr40075	transcription start site region 40075	604 bp upstream
Tssr40076	transcription start site region 40076	631 bp upstream
Tssr40077	transcription start site region 40077	650 bp upstream
Tssr44314	transcription start site region 44314	1404 bp upstream
Tssr44315	transcription start site region 44315	within coordinates
Tssr44316	transcription start site region 44316	74 bp downstream
Tssr44317	transcription start site region 44317	132 bp downstream
Tssr44318	transcription start site region 44318	515 bp downstream
Tssr44319	transcription start site region 44319	1525 bp downstream