rs31870962 SNP Detail

Summary

• ID
  rs31870962
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180077736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTCTGAGA GCAGTAAAAT CCTTAGAGGG AAAAATCACC
  ACTCGAACTA ATGAGCATAG AAAAACAAGC CCCGCTGAGC GATGCCAGGA GGTCCTGGGG
  K
  AGCCTGACTC AGCACAGGCA GTGATGCGCA GGGAGCCTTG CCATTGCTGA CGTCAGACAA
  CCAGCTCCGC ATCCCGAGAG TCCACAGGAA GCACCGAGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45078870	mCV24586024	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31870962					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180077736 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1103	CpG island 1103			within coordinates
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr372537	regulatory region 372537			within coordinates
Rr424424	regulatory region 424424			1763 bp distal
Rr424425	regulatory region 424425			1120 bp distal
Rr424426	regulatory region 424426			within coordinates
Rr424427	regulatory region 424427			1055 bp proximal