rs31871274 SNP Detail

Summary

• ID
  rs31871274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:97202497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTCAGCT CCTGCTTATG
  GTGACCCAGA CTGACACAGA CACGGCTTTA AGATGAACTG TCCTCCAGGC TTTACAGCCT
  CATGACAGTT ATGAGTAGTA CTTAGAAACA TGATTGTTGT CCTGGTTGTT TTCTTAGTTT
  CTGAAGTACA AAATATCATT GATTTATAAA TGTGTTATCA TTTTTTTTAA TTCAAGGTTT
  R
  CCCAAAAGAA TAGTGTATAC AGTGATTCTG TGATCATCTT CTAATGATTT CTGTGGGCAT
  CAATATGAAG ATGACATGTC TGTAAAGGGA TATTTACAGA GTAAATCTGA GGAATATGTC
  TGAATACTAG TATTTCACGC AGTGCTTTAA AAGTTTAATA GTCTATCTAT AGCATAAGAT
  CATAACATGT TCTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45782542	mCV25011130	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A	A
ss46613396	NES10429106	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G	A		A	A	G	A	G	A	A
ss148886278	ENSMUSSNP5688750	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31871274					SNP	G	G	G	A	A	G	A	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46613396	NES10429106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97202497 () rs orientation: forward

Symbol	Name	Function Class
Bmp2k	BMP2 inducible kinase	Intron
Rr399178	regulatory region 399178	1082 bp upstream
Rr615014	regulatory region 615014	1033 bp proximal
Rr615015	regulatory region 615015	1217 bp proximal