rs31871277 SNP Detail

Summary

• ID
  rs31871277
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:97204505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTGACT TGGCAAGCAC
  TGGCTTCTCT GGTTTTACCT GCTCTAGGAG ACAGACAGCA TTTTCTTTCT CTTGAGTCCA
  AGTGAGGGGG ATTATTTCTT GTGTCTTTTT AAAGAACTGG ATCTGGGTTT TGTACAAAAC
  CCTGTGAGAA CATTGCTCTC TGTGCACTCT CAGTCGTAAT GCTGTCCCTT AAGTCTCCTG
  K
  ACTTCCAGCT TGGCAGGCTG ACGTTTCAAC AGCTATGGCT GCCTGTATTG TTTTCTTTAT
  TAGCTTTATT GAGCTGATAT TCTGAGGTGG ATACTTAGAA GGAAACCAGA TGACTGATGT
  GGTCATCTGT AATAATCAAC TGTGTCTGTA TTTTGTAGAA TGAATAGTAA TTTAGAGATA
  ATTTCATTAT TTGGAATGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45753635	mCV25011119	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					T	T
ss46613400	NES10428996	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	T	G	T		T	T	G	T	T	T	T
ss148886309	ENSMUSSNP5272553	ENSEMBL	ENSEMBL_Sanger	f	SNP			G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31871277					SNP	G	G	G	T	T	G	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46613400	NES10428996	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97204505 () rs orientation: forward

Symbol	Name	Function Class
Bmp2k	BMP2 inducible kinase	Intron
Rr399178	regulatory region 399178	625 bp downstream
Rr615014	regulatory region 615014	654 bp distal
Rr615015	regulatory region 615015	770 bp distal