rs31871278 SNP Detail

Summary

• ID
  rs31871278
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:97204616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACTGGA TCTGGGTTTT
  GTACAAAACC CTGTGAGAAC ATTGCTCTCT GTGCACTCTC AGTCGTAATG CTGTCCCTTA
  AGTCTCCTGT ACTTCCAGCT TGGCAGGCTG ACGTTTCAAC AGCTATGGCT GCCTGTATTG
  TTTTCTTTAT TAGCTTTATT GAGCTGATAT TCTGAGGTGG ATACTTAGAA GGAAACCAGA
  K
  GACTGATGTG GTCATCTGTA ATAATCAACT GTGTCTGTAT TTTGTAGAAT GAATAGTAAT
  TTAGAGATAA TTTCATTATT TGGAATGAAT TATATTTTTC TATTATAGAA TAACAGATAC
  CATTGGACCA ACAGAAACCT CAATTGCACC AAGACAAAGA CCAAAGGCCA ATTCCACTGC
  TGCCACTTCC AGTGTGCTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46613401	NES10428997	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	T	G	T	T	T	G	T	G	T	T
ss148886323	ENSMUSSNP1302042	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31871278					SNP	G	G	T	T	G	T	T	T	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46613401	NES10428997	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97204616 () rs orientation: forward

Symbol	Name	Function Class
Bmp2k	BMP2 inducible kinase	Intron
Rr399178	regulatory region 399178	736 bp downstream
Rr615014	regulatory region 615014	765 bp distal
Rr615015	regulatory region 615015	881 bp distal