rs31872733 SNP Detail

Summary

• ID
  rs31872733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:72541731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCTGTCC TCTTCCACAC
  ATGACCTCAG TCACTGTCCA GTTCTGTAGT GGCCACCTTG GCTACTCAGG TGACTAAGCC
  AGTCACCACT ACAACCCCAC CTCCTGACCC AGCACTTTGA CTCTTCATAA CTAGTCCCAA
  ATCAGTGTCC CTCAGAGAGA CAGGAGCTCC CAAGGGCTTT TTTGCAGTTC CGTATCATCG
  Y
  TGTCCTAGAA TAAACTGAGT CACCCTTCAC CACAAGAAAG AGCGATGCAC AACACGTCTG
  ACAAGCCTGG GTTGTGTAAG TCACTGGTTT TAGGAGGATT CTTTGCTATG TCAGTGAACT
  GGCTGACCCA ATCACTTACT GGTTTGCAAG GGCACACTAC CATCTACACT TTCACTAGTC
  ACGGCATGGT GACTCTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39334874	mCV23954912	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss148102846	ENSMUSSNP4177693	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31872733					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:72541731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7154	CpG island 7154	1124 bp distal
Trappc9	trafficking protein particle complex 9	within coordinates