rs31873406 SNP Detail

Summary

• ID
  rs31873406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99662988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGGAGT GGAACCAGCC
  CAAGAGAAAG CTTGTTGCAG TCAACAGAGA TGAAGAACGT GGAGATCTGA AGAGCGCTTT
  GATATCAGAC ATGGAGATGC TGAGTTTGGA GTTGGCTTAG CTGGCTTTTA GTCTTGCTTT
  GGTCCATTAT TTCCTCACCA TGACATTTTG GAATGATAAT TTATATCCTG TGATGTTGGA
  R
  GTATGAGATC TGCTTTTTGA TTTTGATTTC TTAAGGGATT ACAGTTTAGA GATTACATGA
  ATCTCAGAAG AGACTTTAAA AAAAAGGTTT ATGTATTTAT TTTATTTATG TGAGTACACT
  GTAGCAGTCT TCAGACACAC CAGAAGAGCG CAACAGGTTT TATTACAGAA GGTTGTGAGC
  CACCATGTGG TTGCTGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss39335522	mCV23428504	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148470402	ENSMUSSNP1171358	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs31873406					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99662988 () rs orientation: forward

Symbol	Name	Function Class
Cers5	ceramide synthase 5	within coordinates
Gm17058	predicted gene 17058	884 bp upstream