rs31873502 SNP Detail

Summary

• ID
  rs31873502
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:97447954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGGATG GAATTCTGCT
  ATTGTGTTCT GAGTCAATAG GTCCCTATTG TCTTGATCGA TTCCAATAAA AGTTAATTTA
  TTGCTAGGAA AAGTAGGATT TAAAAGATGG CTTACTTCTC ATTTATGTTT ACATCCTTGG
  AATTCATCTT TAAATTAGAA ATTTTTATAT AGGATTTATT GTAACTGAAC CTGCAAGGAC
  W
  GGATTTAGAT TACATTTGTC AAATTGTATG TTGTGAATGA ACTTACTTCC CATTTATAGT
  AAAAAAAAAA AAAAAGACAG AAGAGAATCT AATAGAACGG GTTAAAGTCT CTATCTAGAA
  CCCTCTCACA TGCTCACTTC TCCATGAGCA TCTTAAGATG TCTTGCATCA GAGGCAGTAG
  AAGCTGGCAA GTGGGGAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46614626	NES10418778	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31873502					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46614626	NES10418778	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97447954 () rs orientation: forward

Symbol	Name	Function Class
Gm72500	predicted gene, 72500	within coordinates
Rr615043	regulatory region 615043	85 bp proximal
Rr615044	regulatory region 615044	730 bp proximal
Rr615045	regulatory region 615045	1075 bp proximal