rs31874457 SNP Detail

Summary

• ID
  rs31874457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:6706209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAGTCAT GTGGATGTCC
  CTAGAAAATC ATCTGCCGAC GAGAGTGGTG ATGTGAATAA CGCCTTGCAT TTATGATAAC
  AGTCCCTTCT AAAGTGGACA TTCTGTGTAT CTGCTCCCTT CCTCCTCATC TCTTCAGTAT
  TTTTTCTAGC AGTTGGAGCA GAGGTTTGTT TCAGGAGTAT GCATGGGGTT GTATGAAGGT
  Y
  CAAGACTTGA TATATGGGCT TTGTGGATCA TATGACTTCT TTTTTTTTTT TTAATGTATC
  TTTTTTTTCC ATTTTTTATT AGGTATTTAG CTCATTTACA TTTCCAATGC TATACCAAAA
  GTCCCCCATA CCCAACCACC CCCACTCCCC TACCCACCCA CTCCCCCTTT TTGGCCCTGG
  CGTTCCCCTG TACTGGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47098329	NES11134318	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31874457					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47098329	NES11134318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:6706209 () rs orientation: forward

Symbol	Name	Function Class
St18	suppression of tumorigenicity 18	within coordinates
Tssr5859	transcription start site region 5859	1569 bp downstream
Tssr5860	transcription start site region 5860	within coordinates
Tssr5861	transcription start site region 5861	12 bp upstream
Tssr5862	transcription start site region 5862	1863 bp upstream