rs31874534 SNP Detail

Summary

• ID
  rs31874534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:97448459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCCCAC CCACGGCATG
  GGGAGGGTTA AGTGACACAG AGGATATCCA GAGCCTTTGT GTAGTGACCT GTACACAGTG
  ACTATTACAT ATGTTTGCTT GGAGACCATT TACCCATTTA CTTGACACTA TACAACTTTT
  TGCTCATTTC AACATCTATA CAGCTACCAC ATTATACTTC ATGAAGAGTG CATTAACATC
  Y
  GTTACCCTTC TGAATGTACT TGCTATCAGG ACAGAGACAG GACACTAACT GGATGACCAG
  GATAAAATAT AAAAATTAGA TAAGGACCTC TGTCATACGC AGGCAACTGT GAAAGAATAG
  ATAATTTCTG GGGCTGAAGA AGTGTGTTCT AATAAAGGCA GGCAGCAGAT GAAAAGAATT
  TATAATAGCT AAATTCCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46614628	NES10418650	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31874534					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46614628	NES10418650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97448459 () rs orientation: forward

Symbol	Name	Function Class
Gm72500	predicted gene, 72500	within coordinates
Rr615043	regulatory region 615043	within coordinates
Rr615044	regulatory region 615044	225 bp proximal
Rr615045	regulatory region 615045	570 bp proximal