rs31874536 SNP Detail

Summary

• ID
  rs31874536
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:97449028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATGCAC ACACTTTCCA
  TATCAGTCTA TGCATGTCTA TATGTAGAGA GAGAAATATA TATGTATAGA TACATATTCC
  TTCTGCTCTT TTCATTGTGT TACACATGTC AGGAGCAGGA AGAGCTCTGT TCCCCTCCCT
  CCTCCCCACC CCCCCACAAG CTGGAGGGCC AGAAGGTGGG GCGGTACCTC GGGATAATGT
  M
  GGCAGAAGGC AAAGGGAGCA GACAGCTGGC AAGCTCTGTC CCAATATGCT TCCCTGAAAG
  AGGCGAGGAA ATTGGAGAAG ATGCAATGCC TGAATGGCTC ACTTTGCAGA AAAACAGAAG
  CAGCTAGGTA AAATTCCTTA GAATGCCGTC CTTTCTAAAC GGATCTAGAA TTGAGGACAG
  ACAGCGTTGC AACTCCGTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45785321	mCV23871583	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss46614630	NES10418652	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		C	C	C	C		C	C	C	C		A
ss148892035	ENSMUSSNP5552363	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss321620823	CHEV_5_97730188	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31874536					SNP	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46614630	NES10418652	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97449028 () rs orientation: forward

Symbol	Name	Function Class
Gm72500	predicted gene, 72500	within coordinates
Rr615043	regulatory region 615043	370 bp distal
Rr615044	regulatory region 615044	within coordinates
Rr615045	regulatory region 615045	1 bp proximal