rs31874537 SNP Detail

Summary

• ID
  rs31874537
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:97449176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCACA AGCTGGAGGG
  CCAGAAGGTG GGGCGGTACC TCGGGATAAT GTCGGCAGAA GGCAAAGGGA GCAGACAGCT
  GGCAAGCTCT GTCCCAATAT GCTTCCCTGA AAGAGGCGAG GAAATTGGAG AAGATGCAAT
  GCCTGAATGG CTCACTTTGC AGAAAAACAG AAGCAGCTAG GTAAAATTCC TTAGAATGCC
  S
  TCCTTTCTAA ACGGATCTAG AATTGAGGAC AGACAGCGTT GCAACTCCGT AGCCTTCCTC
  AAGGTCTGTT TGTCAACATT TTATCTTGGA AAATGTTCTA GAAAGCAAAG CCAACTTTAT
  GACCTCTTGA GAGCTGTCCT CATAAACTTA TGAACTGCCA AACGCCAGGT GTCTCCTTGG
  AATTTTCTAG AACAAAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46614631	NES10418653	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G	G	G	G	G		G	G	G		C
ss321620824	CHEV_5_97730336	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31874537					SNP	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46614631	NES10418653	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97449176 () rs orientation: forward

Symbol	Name	Function Class
Gm72500	predicted gene, 72500	within coordinates
Rr615043	regulatory region 615043	518 bp distal
Rr615044	regulatory region 615044	148 bp distal
Rr615045	regulatory region 615045	within coordinates