rs31874541 SNP Detail

Summary

• ID
  rs31874541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:97449479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAAGCC AACTTTATGA
  CCTCTTGAGA GCTGTCCTCA TAAACTTATG AACTGCCAAA CGCCAGGTGT CTCCTTGGAA
  TTTTCTAGAA CAAAAAAATG TACAATGAGA CCTCTGCTTT CAAACACTGA GAGTATAATA
  ATTTCTGGAT AGCAGATGTC CCCATAACGA GCACTACAAA GTTAAGTCCG TTAAATGAAA
  Y
  ATTTTCAAAA TGCCTACTTG TCATCTGAAA CAGATTTTTT TCTAACTTCA TACTTTCTTG
  AAACCGTAGG GGTCATCATA AAAAGAATTA TCAGCAAATC AAATCATGGA GCTCCTAGGG
  GCTGCTGGGA TTTGTGAAAC TGTGTCTGTG GGCCACTAGA ATGAGCAGGC CACTGGAATG
  TGTGGGACTG TTTCTTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46614636	NES10418658	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31874541					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46614636	NES10418658	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97449479 () rs orientation: forward

Symbol	Name	Function Class
Gm72500	predicted gene, 72500	within coordinates
Rr615043	regulatory region 615043	821 bp distal
Rr615044	regulatory region 615044	451 bp distal
Rr615045	regulatory region 615045	293 bp distal