rs31874543 SNP Detail

Summary

• ID
  rs31874543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:97449713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTTCT AACTTCATAC
  TTTCTTGAAA CCGTAGGGGT CATCATAAAA AGAATTATCA GCAAATCAAA TCATGGAGCT
  CCTAGGGGCT GCTGGGATTT GTGAAACTGT GTCTGTGGGC CACTAGAATG AGCAGGCCAC
  TGGAATGTGT GGGACTGTTT CTTGTGGAGC ACTGGAATGT ACCACACTGG TTTTCTGTGG
  Y
  GCATTGGAAA GAATAGGCTG TGTGGGTCTG ATTCCTGTGA GCAGCTGAGA TGTGTCCGAC
  TTTTTCCTGT GGGCAACTGG GACGGGTAGT ATTGGTCCCA ATTTCCTAAA GCTTCTTTTT
  TCTTTTTGCT CTGTGCTATT ATTTCTCCCA AGGTCTATTT TGCTTCTTTT TATGTCAGAT
  GTCAATTGAG TTCTATAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45743712	mCV23871581	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss46614638	NES10418660	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C		C	C	C	C		T
ss148892044	ENSMUSSNP3509535	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss321620826	CHEV_5_97730873	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31874543					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46614638	NES10418660	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97449713 () rs orientation: forward

Symbol	Name	Function Class
Gm72500	predicted gene, 72500	within coordinates
Rr615043	regulatory region 615043	1055 bp distal
Rr615044	regulatory region 615044	685 bp distal
Rr615045	regulatory region 615045	527 bp distal