rs31874609 SNP Detail

Summary

• ID
  rs31874609
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45318397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATCAGT ACTAACAAAT
  TACATGTTTG TCTAGAGGAA AAAAACTCAT GATATCCATA TTCAAAAGAA AACAGGACAA
  TGGTAATTCA GATACTACTT CATGGAAAAT TTGCTTTAAA ATGTTACAAA ACTGAACTTT
  AAAATGAAGC TAAGGAAACA ATAAATTTGT TCTCTTCAAC ATTAAAAATA CCCACTGTTG
  M
  GCTGGAGATG GCTCGTGGGC TAAGAGTACT TACTGCTCTT GTAGGGGACC CAGCTTTGGT
  TTCTAGCACC CGTGTAGCTG CTCACAACCT GTCATAACTC AAGTTTCAGG GGACCTGACC
  TTCCTGTCTG ACCTCCACAA GAAGCTGTCA CACAGCGTGC AAAAACATAC ATGTAGGCAC
  ACTTTCCTGT GCATACTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45580591	mCV22678634	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31874609					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45318397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	1635 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	1962 bp upstream
Tssr37060	transcription start site region 37060	1976 bp upstream
Tssr37061	transcription start site region 37061	1988 bp upstream
Tssr41531	transcription start site region 41531	1873 bp downstream
Tssr41532	transcription start site region 41532	1979 bp downstream