rs31875129 SNP Detail

Summary

• ID
  rs31875129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:6706110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGGTCAT TTTGATGGGA
  AGGAAGCCCA TCTCCATGGT AACTTTAAGT AACCCTTCCA TTGTCAGCAG TCTGTTCATC
  CTACCTCTTC CTGGTAGAGG TTTAGTCATG TGGATGTCCC TAGAAAATCA TCTGCCGACG
  AGAGTGGTGA TGTGAATAAC GCCTTGCATT TATGATAACA GTCCCTTCTA AAGTGGACAT
  Y
  CTGTGTATCT GCTCCCTTCC TCCTCATCTC TTCAGTATTT TTTCTAGCAG TTGGAGCAGA
  GGTTTGTTTC AGGAGTATGC ATGGGGTTGT ATGAAGGTTC AAGACTTGAT ATATGGGCTT
  TGTGGATCAT ATGACTTCTT TTTTTTTTTT TAATGTATCT TTTTTTTCCA TTTTTTATTA
  GGTATTTAGC TCATTTACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47098323	NES11134316	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31875129					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47098323	NES11134316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:6706110 () rs orientation: forward

Symbol	Name	Function Class
St18	suppression of tumorigenicity 18	within coordinates
Tssr5859	transcription start site region 5859	1470 bp downstream
Tssr5860	transcription start site region 5860	84 bp upstream
Tssr5861	transcription start site region 5861	111 bp upstream
Tssr5862	transcription start site region 5862	1962 bp upstream