rs31875136 SNP Detail

Summary

• ID
  rs31875136
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125996802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCTATCAC ATAAGGCCCG AGCAAGCCCC
  TAGCAATAGT AAGGGCTGGC ATTTTTAGGA CAGATTATTC ATTCCTTTTT ATGGGTATTC
  AGGAAGGTGC TGATGAATTT ATGGAAATTT AGAAGGTAGA Tgaaatagag gagaaagaga
  W
  gaagggggag ggatgaaggg agattgatag atgatagata aatagagatg agagagagag
  agCTTTTTAT ATATGAACAG AATATCATAT GGGTATGTAT GAGGGCATCT CTTATTTATT
  TTAGGTCAGC ATATGAAGGT ACAGTCACTA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45079867	mCV22278542	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss145423574	ENSMUSSNP224959	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss319959151	CHEV_1_127965642	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31875136					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125996802 () rs orientation: forward

Symbol	Name	Function Class
Gm35562	predicted gene, 35562	within coordinates
Gm37936	predicted gene, 37936	1075 bp downstream
Nckap5	NCK-associated protein 5	within coordinates