rs31875314 SNP Detail

Summary

• ID
  rs31875314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:97449768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGCAAA TCAAATCATG
  GAGCTCCTAG GGGCTGCTGG GATTTGTGAA ACTGTGTCTG TGGGCCACTA GAATGAGCAG
  GCCACTGGAA TGTGTGGGAC TGTTTCTTGT GGAGCACTGG AATGTACCAC ACTGGTTTTC
  TGTGGCGCAT TGGAAAGAAT AGGCTGTGTG GGTCTGATTC CTGTGAGCAG CTGAGATGTG
  Y
  CCGACTTTTT CCTGTGGGCA ACTGGGACGG GTAGTATTGG TCCCAATTTC CTAAAGCTTC
  TTTTTTCTTT TTGCTCTGTG CTATTATTTC TCCCAAGGTC TATTTTGCTT CTTTTTATGT
  CAGATGTCAA TTGAGTTCTA TAGCCTAGTT GTGGTGAAAT TACAAAGGTA GGAAACTGTC
  TCCAAGTAAG GACTCATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46614639	NES10418661	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31875314					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46614639	NES10418661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97449768 () rs orientation: forward

Symbol	Name	Function Class
Gm72500	predicted gene, 72500	within coordinates
Rr615043	regulatory region 615043	1110 bp distal
Rr615044	regulatory region 615044	740 bp distal
Rr615045	regulatory region 615045	582 bp distal