rs31875315 SNP Detail

Summary

• ID
  rs31875315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:97449917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAAAGAA TAGGCTGTGT
  GGGTCTGATT CCTGTGAGCA GCTGAGATGT GTCCGACTTT TTCCTGTGGG CAACTGGGAC
  GGGTAGTATT GGTCCCAATT TCCTAAAGCT TCTTTTTTCT TTTTGCTCTG TGCTATTATT
  TCTCCCAAGG TCTATTTTGC TTCTTTTTAT GTCAGATGTC AATTGAGTTC TATAGCCTAG
  Y
  TGTGGTGAAA TTACAAAGGT AGGAAACTGT CTCCAAGTAA GGACTCATGG TTCTCACTGC
  CCAGGCCTCA TTCTGCATAG TGTAATAGCT TTCTCAGTTG CTAGCTTCCT GGGTGTCAGC
  AAAGAGGCTA ATGAATTGCT GAATTCTGAA CAAAAAAGAA ACATTTTTCT TGACCGTTAT
  TATTGTTTTA AAGTGCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45743387	mCV23871579	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss46614641	NES10418663	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T		T	T	T	T		C
ss148892055	ENSMUSSNP6241385	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss321620828	CHEV_5_97731077	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31875315					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46614641	NES10418663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97449917 () rs orientation: forward

Symbol	Name	Function Class
Gm72500	predicted gene, 72500	within coordinates
Rr615043	regulatory region 615043	1259 bp distal
Rr615044	regulatory region 615044	889 bp distal
Rr615045	regulatory region 615045	731 bp distal