rs31875438 SNP Detail

Summary

• ID
  rs31875438
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:6708040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTATGCC AAACAGTAAT
  ATTTGAATTT TGTATAATTT ACATGTGCCT AAGGTATTCA CTATCTTTTT GCTCTACTAT
  TTCAAACTAG AAATATAAAA TAAAGTAACC TGAGTGTTAA TATAAAAACT GGTTTTAAGA
  AAAGCAAAAC AAAACAAAAC AAAAAAACCC AACAAACAAA AAATAAGACT TAGCCTGAAG
  M
  CTACTCTATG CTATAAATAT GGAGGGAAGG GGGGCTAAAC AGACAGAAGT CTGTACCTAG
  CTTTATGACC TGGAAACTGC ATAATGTTTT AAAGTTTTAG TCATCCTTTC ACATACTTTT
  ATTAACATTG ATGATTTTGT CTTATTGAAC ATAGTATTTA TTTTTTTCCT GCCACTATTT
  TAATATATAC TTAACTATGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47098341	NES11134275	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31875438					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47098341	NES11134275	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:6708040 () rs orientation: forward

Symbol	Name	Function Class
St18	suppression of tumorigenicity 18	within coordinates
Tssr5860	transcription start site region 5860	1824 bp downstream
Tssr5861	transcription start site region 5861	1802 bp downstream
Tssr5862	transcription start site region 5862	32 bp upstream
Tssr5863	transcription start site region 5863	273 bp upstream