rs31876247 SNP Detail

Summary

• ID
  rs31876247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:6708196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGCTTTA TGACCTGGAA ACTGCATAAT GTTTTAAAGT
  TTTAGTCATC CTTTCACATA CTTTTATTAA CATTGATGAT TTTGTCTTAT TGAACATAGT
  R
  TTTATTTTTT TCCTGCCACT ATTTTAATAT ATACTTAACT ATGCACCTGT CTGTATAGTA
  ATAAAGCAAA CATATCTTTG TTGTGTGATT TAATAAATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45174156	mCV23851644	ABI	CRAMUS_MOUSE	f	SNP		A						A	G
ss47098350	NES11134279	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	A	A	A	A	A	A	G
ss148501885	ENSMUSSNP1779615	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31876247					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47098350	NES11134279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:6708196 () rs orientation: forward

Symbol	Name	Function Class
St18	suppression of tumorigenicity 18	within coordinates
Tssr5860	transcription start site region 5860	1980 bp downstream
Tssr5861	transcription start site region 5861	1958 bp downstream
Tssr5862	transcription start site region 5862	99 bp downstream
Tssr5863	transcription start site region 5863	117 bp upstream