rs31877108 SNP Detail

Summary

• ID
  rs31877108
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133856956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT CCTCAAAGCC ACAGAAACCC
  W
  GAAGCTGCTG ACCTCTGAGA GGTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45580236	mCV24805076	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss147518541	ENSMUSSNP7071792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321345455	CHEV_4_133685560	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31877108					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133856956 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	213 bp downstream
Cpgi15028	CpG island 15028	525 bp distal
Gm68742	predicted gene, 68742	34 bp upstream
Rr601575	regulatory region 601575	366 bp distal
Rr601576	regulatory region 601576	within coordinates
Rr601577	regulatory region 601577	34 bp proximal
Rr601578	regulatory region 601578	182 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	912 bp upstream
Tssr39536	transcription start site region 39536	1930 bp downstream
Tssr39537	transcription start site region 39537	1679 bp downstream
Tssr43866	transcription start site region 43866	1959 bp upstream
Tssr43867	transcription start site region 43867	1925 bp upstream
Tssr43868	transcription start site region 43868	1854 bp upstream
Tssr43869	transcription start site region 43869	1834 bp upstream
Tssr43870	transcription start site region 43870	1672 bp upstream
Tssr43871	transcription start site region 43871	1622 bp upstream
Tssr43872	transcription start site region 43872	1595 bp upstream
Tssr43873	transcription start site region 43873	1569 bp upstream
Tssr43874	transcription start site region 43874	1554 bp upstream
Tssr43875	transcription start site region 43875	945 bp upstream
Tssr43876	transcription start site region 43876	875 bp upstream
Tssr43877	transcription start site region 43877	34 bp upstream