rs31877425 SNP Detail

Summary

• ID
  rs31877425
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89530099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACAAGCTAC AGTTGAGGTA GTTGAGGTGT CCTCATGAAT CTTGGAGCCC ATGTGGGTAG
  CACAGTCCCT GCACCTTTAT TCTGTCCACT TGGCTATCAT TCATAACCCA CTGTCATGAT
  TAACGAGACT AGTGAAGGAA CTGATGTCAC ATTTTACATG TCTAACCTGG AGTCCTTGTA
  GCCTGTCACC ACAGGAGGGA GGTCAGGACC CAGCACCCAC TTTTTCCTTT GTTGAGCTGA
  CTAAAGACTG TTAAGTTCTG GGACCATAGC TTGGTGTTAG AGCAATTGTC TAGCGTGTGG
  W
  GGAGGCCCTG TGTTGGTTGC ACTGCACTGC AGAAGGGGGG GGGGGGGTAA TCGAAGCCGT
  GCTTGGTTTG TGATGAGGAA TGACAAGCCA CAGTGGAGGT CACTTGTGGC ATCAAACAGG
  AGCCAGGCAG CCTGACCCAC ACCTAGCAGA AGGCTCAGTG GGCTACCCAC GCCCACCAGT
  GGTAATCTCT GCCCTACTGT TAAATTGCAG TGCAGTAGTA CTTTATCTAA ACCAGTGCCC
  GTGAATGTGT TTCCTTCTTG TATTCCATGG AGTGAGGTGT TAAGTGGGCA CCGCAGTTTC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45080319	mCV25258991	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31877425					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89530099 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr35151	regulatory region 35151	within coordinates
Tssr8003	transcription start site region 8003	847 bp upstream