rs31878220 SNP Detail

Summary

• ID
  rs31878220
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:4026128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT GTAGCCTGGT AGAAAATATT
  W
  AAACTATGAA AATAGTAATG TGATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss39335383	mCV23812963	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	A
ss49379122	NES12542502	PERLEGEN	MM_PANEL2	f	SNP					A	A	A	A	T
ss147038875	ENSMUSSNP518906	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31878220					SNP	A	A	T	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49379122	NES12542502	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4026128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	353 bp distal
Gm2093	predicted gene 2093	within coordinates
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	902 bp upstream
Rr369897	regulatory region 369897	within coordinates
Rr498628	regulatory region 498628	913 bp distal
Rr498629	regulatory region 498629	599 bp distal
Rr498630	regulatory region 498630	within coordinates
Tssr133595	transcription start site region 133595	1401 bp upstream
Tssr133596	transcription start site region 133596	886 bp upstream