rs31878369 SNP Detail

Summary

• ID
  rs31878369
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66844550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCAGACA TGCAAAGGCA
  GATCTTACTT TAGTCACAAC CACGAAGAAG AAGCAACCCC TGAGCCCTTC CTCCTTTTCT
  GTTCCTGGCA TTTGGCCCAC ATGTGGACAC CATATCCTCT TTCCCATACT TGTCTCAGTC
  TTATTCTGAA CACGTATTGC TATTAGCCAA TTACCATTTG GAAATTAAAT CGCCGTGTGG
  W
  TATGTGTATG GCTCAAAAGT TGCCTTACAG GAAAATCACA TCTAAAAGTA AAAGATCAGA
  ACATGTTGGC CTTTTGTTGG AGTTTTCAGT GGTTTGTACT CTCAGTGGGA AGTGCAGAAT
  CTTTAATATG ATTTCTAAGT CCTCACATGA TCTCTGTGTG AGACTTGCCT CTGCAGTTTT
  GGTATGCACC ATTAACTATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47599949	NES11431362	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31878369					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47599949	NES11431362	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66844550 () rs orientation: forward

Symbol	Name	Function Class
Gm64317	predicted gene, 64317	within coordinates
Marchf1	membrane associated ring-CH-type finger 1	within coordinates
Tssr77555	transcription start site region 77555	245 bp upstream