rs31878603 SNP Detail

Summary

• ID
  rs31878603
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42336874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAAAGCAA ACCCTGCCTG CGAGTGCTCA GAGCCTCTGC
  AGAGACCTTA CACAGCCCAC CCCAAGACAA AGCACAGGCC CTGAAAACTA ACCTGAAAAC
  W
  AAAACAAGAG GCAGGCAGGC AGGCAGGCAG GCAGGCAGGC AGGCAGGCAG GCAGGCAGGC
  AGAGCCTCAC CGTGGGCTTC CTATTTGCAT GGATACAATT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ
ss49285693	NES12709025	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ
rs31878603					SNP	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49285693	NES12709025	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42336874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9990	CpG island 9990	802 bp distal
Lars1	leucyl-tRNA synthetase 1	within coordinates