rs31879256 SNP Detail

Summary

• ID
  rs31879256
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42336567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGTTTT TATTTAAGCA
  ATTCTGAGAC TTCTCAGCAT CAAACAATTC TGGTTTTATA TGGTGGGGAA ATCACGATGG
  CTCCTTCTGG GTCTGTCGTT CTAAGCATAG TGTGGCCAGT TGTGCTTCAC CCGCCCCTCC
  CCAAAACACA TTTCCTACAT TACTCCTAAG CTTTTCTAAC ACAGACCACT GGGTGGTCTG
  K
  GAGCTGCATT CCCTTGTGGT GTCTCAAGAG GACAAAGCTT AGCTTTGTAA GGGATAAGAG
  ATAAAAGAAG ACATTAATGC AGCTGGCAGC CATACCCAGA GTATAAGTCT TCCAGGCATT
  TTGTTCTCTC TGGGAAACAA GGACGAAAAG GTTGCAAGTT TAGAGAAGAG CTCTCAGGGC
  TTATAGAGCA ATTGCCTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49285696	NES12709019	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31879256					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49285696	NES12709019	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42336567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9990	CpG island 9990	495 bp distal
Lars1	leucyl-tRNA synthetase 1	within coordinates