rs31879258 SNP Detail

Summary

• ID
  rs31879258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:42336269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGGACC TTATTGAGTT
  ATTTTTGGAG CAGTCCCAAT CACTGTGAGA AACAGTGTTA CCTGTTCCAT CGTTTACTCA
  AGAGGTAACC AGTGTCTGTA GCACAAGCTG GTGAGAACCA AGACGAAAGA GCAGGCAGGG
  GGAGTTGCAG CTTGGAGGAC TGCTCTAATG TGACCTGCAC TTAGCCTGCT GCTGCAGGCT
  R
  GTAATATGGC TCCTGACTAA AAACAACCAT GACAACACAA ACCACAGCCA AATGAGCGCT
  TGCCCTATGA ATAAATTTAT GATTTAACAA TCAGGTCAAA AAGTTTTTAT TTAAGCAATT
  CTGAGACTTC TCAGCATCAA ACAATTCTGG TTTTATATGG TGGGGAAATC ACGATGGCTC
  CTTCTGGGTC TGTCGTTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49285699	NES12709014	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31879258					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49285699	NES12709014	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42336269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9990	CpG island 9990	197 bp distal
Gm5504	predicted gene 5504	1857 bp downstream
Lars1	leucyl-tRNA synthetase 1	within coordinates