rs31879290 SNP Detail

Summary

• ID
  rs31879290
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118453729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCTCTGGG CAGCTTCAAA GATCTAGGCC AGACTTGAGC
  CATATCAAGT CCACTCTCAC CTTGCTTTAG GCGCACACCT TTAATCCCAG CACTCCGGAG
  S
  CAGAGGCAGG CAGATTTCTG AGTTCAAGGC CAGCCTGGTC TACAAAGTGA GTTCCAGGAC
  AGCCAGAGCT ATACAGATAA ACCAAAAAAA AAAAAAAAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss46079023	mCV23653554	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss145794211	ENSMUSSNP164219	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs31879290					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118453729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19628	CpG island 19628	603 bp proximal
Iqck	IQ motif containing K	1246 bp upstream
Knop1	lysine rich nucleolar protein 1	within coordinates
Rr654563	regulatory region 654563	557 bp proximal
Rr654564	regulatory region 654564	1097 bp proximal
Rr654565	regulatory region 654565	1458 bp proximal
Tssr68731	transcription start site region 68731	1229 bp upstream
Tssr74457	transcription start site region 74457	1143 bp downstream
Tssr74458	transcription start site region 74458	1445 bp downstream
Tssr74459	transcription start site region 74459	1468 bp downstream
Tssr74460	transcription start site region 74460	1478 bp downstream
Tssr74461	transcription start site region 74461	1511 bp downstream
Tssr74462	transcription start site region 74462	1527 bp downstream
Tssr74463	transcription start site region 74463	1855 bp downstream