rs31879387 SNP Detail

Summary

• ID
  rs31879387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148527110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTC TCACTGCCTT CAGTCTAACT
  Y
  AGGTATAACC TCTTCAGTGA GCCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45581606	mCV24215082	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss148007640	ENSMUSSNP940351	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321420456	CHEV_4_147816762	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31879387					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148527110 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15303	CpG island 15303			1525 bp proximal
Gm23303	predicted gene, 23303			699 bp downstream
Tssr44605	transcription start site region 44605			1802 bp downstream
Ubiad1	UbiA prenyltransferase domain containing 1			Intron
				Noncoding-Transcript-Variant